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Protein function prediction
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41	Structure-based function inference using protein family-specific fingerprints Special Section on Automated Function Prediction Deepak Bandyopadhyay∗†, Jun Huan∗ , Jinze Liu∗ , Jan Prins∗ , Jack Snoeyink∗ , We Add to Reading List Source URL: www.cs.ucla.edu Language: English - Date: 2006-02-16 17:59:18 Biological databases Protein domains Proteins Structural Classification of Proteins InterPro Protein family Structural genomics SUPERFAMILY Protein function prediction Biology Protein structure Bioinformatics
42	September 28, 2006 RIKEN Genomic Sciences Center Protein Function Team, Protein Research Group Project Director: Dr. Shigeyuki Yokoyama Senior Visiting Scientist: Dr. Hideaki Umeyama Add to Reading List Source URL: www.riken.jp Language: English - Date: 2013-05-17 05:21:16 Protein methods Protein structure Chemistry Genomics Structural genomics RIKEN Homology modeling Protein structure prediction CASP Bioinformatics Science Biology
43	Thinking about HOSU from a Protein Structure, Function, Evolution View Joseph Jez Washington University St. Louis, MO Add to Reading List Source URL: www.europabio.org Language: English - Date: 2012-11-22 11:06:18 Proteins Bioinformatics Protein structure Proteomics Protein folding Protein Enzyme Evolution Protein–protein interaction prediction Biology Chemistry Biochemistry
44	Analysis OPEN npg © 2013 Nature America, Inc. All rights reserved. Add to Reading List Source URL: compbio.berkeley.edu Language: English - Date: 2013-06-10 15:53:33 Protein function prediction Gene Ontology UniProt Protein family Protein structure Sequence alignment Protein domain Protein–protein interaction prediction Critical Assessment of Function Annotation Bioinformatics Science Biology
45	Downloaded from genome.cshlp.org on July 13, [removed]Published by Cold Spring Harbor Laboratory Press Genome-scale phylogenetic function annotation of large and diverse protein families Barbara E. Engelhardt, Michael I. Add to Reading List Source URL: compbio.berkeley.edu Language: English - Date: 2012-07-13 18:05:39 Biology Protein function prediction Protein family Structural alignment UniProt Gene Ontology Genome project Pfam Protein domain Bioinformatics Biological databases Science
46	THE EIGHTH INTERNATIONAL CONFERENCE ON SYSTEMS BIOLOGY ICSB 2007 October 1 – 6, 2007 Long Beach, California, USA Predicting Gene Function in Yeast through Adaptive Weighting of Multi-Source Information Shubhra Sankar R Add to Reading List Source URL: shubhrasankar.tripod.com Language: English - Date: 2010-11-30 03:11:03 Systems biology Mathematical and theoretical biology Biological databases Bioengineering Genomics KEGG Cytoscape Protein–protein interaction prediction Biology Science Bioinformatics
47	PROTEINS: Structure, Function, and Genetics 49:154 –[removed]Combining the GOR V Algorithm With Evolutionary Information for Protein Secondary Structure Prediction From Amino Acid Sequence A. Kloczkowski,1 K.-L. Tin Add to Reading List Source URL: gor.bb.iastate.edu Language: English - Date: 2004-04-20 19:05:42 Protein secondary structure Protein structure prediction Sequence alignment GOR method Multiple sequence alignment Homology modeling Threading Sequence analysis STING Bioinformatics Science Biology
48	Understanding protein structure is of crucial importance in science, medicine and biotechnology. For about two decades, knowledge based potentials based on pairwise distances – so-called “potentials of mean force” Add to Reading List Source URL: www.medicine-science.net23.net Language: English - Date: 2013-02-01 02:03:44 Science Protein methods Statistical potential Biology Computational chemistry Molecular modelling Molecular dynamics Radial distribution function Protein structure prediction Bioinformatics Protein structure Chemistry
49	BIOINFORMATICS ORIGINAL PAPER Vol. 21 no[removed], pages 3217–3226 doi:[removed]bioinformatics/bti514 Add to Reading List Source URL: www.ram.org Language: English - Date: 2005-12-27 20:41:02 Interactome Protein function prediction FlyBase Protein–protein interaction Gene Ontology Interolog InterPro STRING Protein–protein interaction prediction Biology Bioinformatics Science
50	proteins STRUCTURE O FUNCTION O BIOINFORMATICS A generalized knowledge-based discriminatory function for biomolecular interactions Brady Bernard1 and Ram Samudrala2* Add to Reading List Source URL: compbio.washington.edu Language: English - Date: 2009-10-18 01:52:51 Science Protein structure Molecular biology Molecular modelling Protein methods Root-mean-square deviation Protein structure prediction Docking Interactome Bioinformatics Biology Chemistry

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